PSIbase: a database of Protein Structural Interactome map (PSIMAP).

TitlePSIbase: a database of Protein Structural Interactome map (PSIMAP).
Publication TypeJournal Article
Year of Publication2005
AuthorsGong, S, Yoon, G, Jang, I, Bolser, D, Dafas, P, Schroeder, M, Choi, H, Cho, Y, Han, K, Lee, S, Choi, H, Lappe, M, Holm, L, Kim, S, Oh, D, Bhak, J
JournalBioinformatics
Volume21
Issue10
Pagination2541-3
Date Published2005 May 15
ISSN1367-4803
KeywordsBinding Sites, Computer Graphics, Computer Simulation, Databases, Protein, Internet, Models, Biological, Models, Chemical, Models, Molecular, Protein Binding, Protein Conformation, Protein Interaction Mapping, Proteins, Sequence Alignment, Sequence Analysis, Protein, Sequence Homology, Amino Acid, User-Computer Interface
Abstract

UNLABELLED: Protein Structural Interactome map (PSIMAP) is a global interaction map that describes domain-domain and protein-protein interaction information for known Protein Data Bank structures. It calculates the Euclidean distance to determine interactions between possible pairs of structural domains in proteins. PSIbase is a database and file server for protein structural interaction information calculated by the PSIMAP algorithm. PSIbase also provides an easy-to-use protein domain assignment module, interaction navigation and visual tools. Users can retrieve possible interaction partners of their proteins of interests if a significant homology assignment is made with their query sequences.AVAILABILITY: http://psimap.org and http://psibase.kaist.ac.kr/

DOI10.1093/bioinformatics/bti366
Alternate JournalBioinformatics
Citation Key10.1093/bioinformatics/bti366
PubMed ID15749693